ywqM [2019-06-19 12:42:13]

similar to transcriptional regulator ([SW|LysR family])

locus: BSU36160

pI: 5.57

mw: 33.02 kDa

protein length: 293 aa

gene length: 882 bp

function: unknown

product: transcriptional regulator ([SW|LysR family])

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 3,723,454 → 3,724,335

The protein

Protein family

• [SW|LysR family]

Structure

• [PDB|5Y2V] (from Synechocystis PCC6803, 29% identity) [pubmed|29279392]

Expression and Regulation

Operons

• genes: [gene|B6CC41A844FDF1DBCB899447F35E006BC94B064B|ywqM]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-A567 (ywqM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/567 NBRP B. subtilis, Japan]
• BKE36160 (Δ[gene|B6CC41A844FDF1DBCB899447F35E006BC94B064B|ywqM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTGTTCTCTTCCTTTCT, downstream forward: _UP4_TAAAACCTCTCCACAAGGAC
• BKK36160 (Δ[gene|B6CC41A844FDF1DBCB899447F35E006BC94B064B|ywqM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTGTTCTCTTCCTTTCT, downstream forward: _UP4_TAAAACCTCTCCACAAGGAC

References

Research papers

• 29279392